#plotting format
plotformat = theme(plot.title = element_text(face="bold",size = 17,hjust = 0.5),axis.title = element_text(face = "bold",size =15), axis.text.x = element_text(size=12), axis.title.y=element_text(size=14))+theme_bw()
theme_facet = function(base_size = 14, base_family = "Helvetica") {
# Starts with theme_grey and then modify some parts
theme_bw(base_size = base_size, base_family = base_family) %+replace%
theme(
strip.background = element_blank(),
strip.text.x = element_text(size = 10),
strip.text.y = element_text(size = 10),
axis.text.x = element_blank(),
axis.text.y = element_text(size=12,hjust=1),
axis.ticks = element_blank(), #element_line(colour = "black"),
axis.title.x= element_text(size=12),
axis.title.y= element_text(size=12,angle=90),
panel.background = element_blank(),
panel.border =element_blank(),
panel.grid.minor = element_blank(),
panel.spacing = unit(0.5, "lines"),
plot.background = element_blank(),
plot.margin = unit(c(0.3, 0.3, 0.3, 0.3), "lines"),
axis.line.x = element_line(color="black", size = 0.5),
axis.line.y = element_line(color="black", size = 0.5)
)
}
#color
Features = c('#deebf7','#9ecae1','#6baed6','#4292c6','#08519c','#08306b',
'#fee6ce','#fdae6b','#fd8d3c','#f16913','#a63603','#7f2704',
'#f0f0f0','#bdbdbd','#969696','#737373','#252525','#000000',
'#efedf5','#bcbddc','#9e9ac8','#807dba','#54278f','#3f007d')
dataPath = '/Volumes/Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/';
SameDifferent_fnames = list.files(path = dataPath,pattern = "SameDifferent")
Demo_fnames = list.files(path = dataPath,pattern = "demographics")
##specify variables
#for behavior information
completeFnames =list()
totalData = data.frame()
ic = 1;
#for demographic information
gender = data.frame()
age = data.frame()
ethnicity= data.frame()
race = data.frame()
subID = data.frame()
##
for (ifiles in 1:length(SameDifferent_fnames)){
tempFile = read.table(paste0(dataPath,SameDifferent_fnames[ifiles]),header = F)
Trials = unlist(strsplit(as.character(tempFile$V1), ";"))
if (length(Trials)>10){
keyNum = data.frame()
accuracy = data.frame()
feature_index = data.frame()
RT = data.frame()
Fir_img = data.frame()
Sec_img = data.frame()
for (i in 1:length(Trials)){
temp = unlist(strsplit(Trials[i],","));
keyNum = rbind(keyNum,as.numeric(temp[2]))
accuracy = rbind(accuracy,as.numeric(temp[4]))
RT = rbind(RT,as.numeric(temp[5]))
feature_index = rbind(feature_index,as.numeric(temp[6]))
Fir_img = rbind(Fir_img,as.numeric(temp[7]))
Sec_img = rbind(Sec_img,as.numeric(temp[8]))
}
data = cbind(keyNum,accuracy,RT, feature_index,Fir_img,Sec_img)
colnames(data) = c("keys","accuracy", "rt","feature_index", "Fimg","Simg")
data = data[-1,]
data$subID = ifiles;
data$trialNum = 1:dim(data)[1];
totalData = rbind(totalData,data)
#subject ID for completing the tasks
for (ifilesDe in 1:length(Demo_fnames)){
if (unlist(strsplit(SameDifferent_fnames[ifiles],"SameDifferent"))[2]==unlist(strsplit(Demo_fnames[ifilesDe],"demographics"))[2]){
tempDemoFile = read.table(paste0(dataPath,Demo_fnames[ifilesDe]),header = F)
Demo_info = unlist(strsplit(as.character(tempDemoFile$V1), ";"))
gender[ic,1] = unlist(Demo_info[1])
age[ic,1]=unlist(Demo_info[2])
ethnicity[ic,1]=unlist(Demo_info[3])
race[ic,1]=unlist(Demo_info[4])
subID[ic,1]=unlist(ifiles)
}
completeFnames[ic] =unlist(strsplit(SameDifferent_fnames[ifiles],"SameDifferent"))[2]}
ic = ic+1;
}else{
}
}
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent308Q0PEVB8D79MIMPLUPOLB2LHGI9F.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics308Q0PEVB8D79MIMPLUPOLB2LHGI9F.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent31T4R4OBOSGCI08TIE0JZMM1DM8C7V.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics31T4R4OBOSGCI08TIE0JZMM1DM8C7V.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent34FNN24DCM9AYZVFQD3BYT0OP4OY53.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics34FNN24DCM9AYZVFQD3BYT0OP4OY53.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent369J354OFDA6VCAT1QRAJZ7KGGUG6E.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics369J354OFDA6VCAT1QRAJZ7KGGUG6E.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent36W0OB37HWEMJIPFN1631XCG0G8ZHJ.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent38F5OAUN5NC3Z8J946EKADJHQFM7HA.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics38F5OAUN5NC3Z8J946EKADJHQFM7HA.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent39KFRKBFINVW691XVSZA7Z0F68GYOD.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3AAPLD8UCCHQX6GGH9HLF9BZFBTHTA.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3AAPLD8UCCHQX6GGH9HLF9BZFBTHTA.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3DZQRBDBSLFAOYW2DONT1AE3UWP3SA.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3FFJ6VRIL1OPDSU9PPBWVAA9IDBI0S.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3FFJ6VRIL1OPDSU9PPBWVAA9IDBI0S.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3I2PTA7R3TU47GPW6QQNNWG4NZDKQA.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3I2PTA7R3TU47GPW6QQNNWG4NZDKQA.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3II4UPYCOJ7WTAJME940JJLE3C0DQI.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3II4UPYCOJ7WTAJME940JJLE3C0DQI.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3IX2EGZR7BJ98XYE1KFBR7QW4JIJRO.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3IX2EGZR7BJ98XYE1KFBR7QW4JIJRO.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3J2UYBXQQLC9K8Z8NO27Y7K49MI60O.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3J2UYBXQQLC9K8Z8NO27Y7K49MI60O.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3M0NZ3JDP1YA3P5KMZ5UC09QVYN5ZW.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3M0NZ3JDP1YA3P5KMZ5UC09QVYN5ZW.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3M68NM076H7XK2J7H1LMI3LRICGR66.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3M68NM076H7XK2J7H1LMI3LRICGR66.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3NPI0JQDAO5IANE40MPQOIDQ1D1PT7.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3NPI0JQDAO5IANE40MPQOIDQ1D1PT7.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3PDJHANYK5GKV854LW9S4ZJLV3L6HR.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3PDJHANYK5GKV854LW9S4ZJLV3L6HR.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3PEIJLRY6TTFBDKPHI4I5F6S7WEWXU.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3PEIJLRY6TTFBDKPHI4I5F6S7WEWXU.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3PW9OPU9PQKL9W1PW5U4MZM2Y9M125.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3PW9OPU9PQKL9W1PW5U4MZM2Y9M125.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3R9WASFE2ZG25MY9SBI3YC03KTLFZB.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3R9WASFE2ZG25MY9SBI3YC03KTLFZB.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3SPJ0334213I5YA0FF75Z3JT75IYJO.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3SPJ0334213I5YA0FF75Z3JT75IYJO.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3TVSS0C0E108UWB5C83LGCLMU0KWT5.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3TVSS0C0E108UWB5C83LGCLMU0KWT5.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3U0SRXB7CD55RNPZGI73KE7DDB2NRR.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3U0SRXB7CD55RNPZGI73KE7DDB2NRR.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3UNH76FOCS5866GLICKXFVBABZIMYL.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3UNH76FOCS5866GLICKXFVBABZIMYL.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3VHHR074H3H5L42ZVRTI25CO7PXL7J.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3VHHR074H3H5L42ZVRTI25CO7PXL7J.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3VNXK88KKCICVS2MOST83A1WTJZV9C.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3VNXK88KKCICVS2MOST83A1WTJZV9C.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3W2LOLRXLBF4JH4WJ5FNSMQ9J78RKJ.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3W2LOLRXLBF4JH4WJ5FNSMQ9J78RKJ.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3X1FV8S5JXRRA2PU2YZIVRNJXWUGVO.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3X1FV8S5JXRRA2PU2YZIVRNJXWUGVO.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3X4MXAO0BGOVEHYD8JYQGXK46E9RW7.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3X4MXAO0BGOVEHYD8JYQGXK46E9RW7.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3YJ6NA41JBGOWKIZOSBMMCQH30GJPG.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3YJ6NA41JBGOWKIZOSBMMCQH30GJPG.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3YMU66OBIN8MS1UAX9IEGQWAPHSHG8.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3YMU66OBIN8MS1UAX9IEGQWAPHSHG8.txt'
## Warning in read.table(paste0(dataPath, SameDifferent_fnames[ifiles]),
## header = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## SameDifferent3ZSY5X72NXBN98PBHX7GZ37I3C8ORQ.txt'
## Warning in read.table(paste0(dataPath, Demo_fnames[ifilesDe]), header
## = F): incomplete final line found by readTableHeader on '/Volumes/
## Macintosh HD/Users/Pam_sf_wang/Documents/AMTdata/Calibration_NewDesign_006/
## demographics3ZSY5X72NXBN98PBHX7GZ37I3C8ORQ.txt'
demographic_information = cbind(gender,age,ethnicity,race,subID)
colnames(demographic_information) = c("Gender","Age","Ethnicity","Race","SubID")
demographic_information$Age = as.numeric(demographic_information$Age)
summarize = dplyr::summarize
#check basic performance -- remove non-responding subjects
temp = totalData %>% group_by(subID) %>% summarize(num_noresponses= sum(keys==-1), trialNum = length(subID))
sprintf("total trial number: %i; Number of subjects %i",temp$trialNum[1],dim(temp)[1])
## [1] "total trial number: 84; Number of subjects 30"
temp
## # A tibble: 30 x 3
## subID num_noresponses trialNum
## <int> <int> <int>
## 1 2 0 84
## 2 3 0 84
## 3 4 0 84
## 4 5 0 84
## 5 7 0 84
## 6 9 0 84
## 7 11 0 84
## 8 12 3 62
## 9 13 0 84
## 10 14 0 84
## # ... with 20 more rows
ggplot(temp, aes( y= num_noresponses, x= subID))+
geom_point()+
geom_hline(yintercept=42, linetype="dashed", color = "red", size=0.5)+
labs(title="No responses", x ="subjuect ID", y = "number of no responses")+
plotformat
#check feature number
tempFeature = totalData %>% group_by(subID) %>%summarize(feature = feature_index[1])
sprintf("Feature 1: %i; Feature 2: %i; Feature 3: %i",sum(tempFeature$feature==1),sum(tempFeature$feature==2),sum(tempFeature$feature==3))
## [1] "Feature 1: 10; Feature 2: 10; Feature 3: 10"
#no response subjects
removeSub = temp$subID[temp$num_noresponses>42]
totalData = totalData%>%filter(!subID %in% removeSub)
demographic_information = demographic_information%>%filter(!SubID %in%removeSub)
sprintf("remove subjects %i",length(removeSub))
## [1] "remove subjects 0"
genderCount = table(demographic_information$Gender)
EthnicityCount = table(demographic_information$Ethnicity)
RaceCount = table(demographic_information$Race)
genderCount
##
## F M
## 9 21
EthnicityCount
##
## HL NA NHL
## 2 1 27
RaceCount
##
## A AI M W
## 3 1 4 22
summary(demographic_information$Age)
## Min. 1st Qu. Median Mean 3rd Qu. Max. NA's
## 26.00 31.00 38.00 39.28 47.00 64.00 1
ggplot(demographic_information, aes(demographic_information$Age)) +
geom_histogram()+
geom_vline(xintercept=median(demographic_information$Age), linetype="dashed", color = "red", size=0.5)+
#geom_vline(xintercept=mean(demographic_information$Age), linetype="dashed", color = "blue", size=0.5)+
labs(title = "Age Distribution",x = "age", y = "counts")+
plotformat
## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
## Warning: Removed 1 rows containing non-finite values (stat_bin).
## Warning: Removed 1 rows containing missing values (geom_vline).
#select right age
remainSub = demographic_information$SubID[demographic_information$Age<35]
demographic_information_remain = filter(demographic_information,SubID%in%remainSub)
summary(demographic_information_remain$Age)
## Min. 1st Qu. Median Mean 3rd Qu. Max.
## 26.00 28.00 30.00 29.92 32.00 34.00
ggplot(demographic_information_remain, aes(Age)) +
geom_histogram()+
geom_vline(xintercept=median(demographic_information_remain$Age), linetype="dashed", color = "red", size=0.5)+
#geom_vline(xintercept=mean(demographic_information$Age), linetype="dashed", color = "blue", size=0.5)+
labs(title = "Age Distribution",x = "age", y = "counts")+
plotformat
## `stat_bin()` using `bins = 30`. Pick better value with `binwidth`.
genderCount = table(demographic_information_remain$Gender)
EthnicityCount = table(demographic_information_remain$Ethnicity)
RaceCount = table(demographic_information_remain$Race)
genderCount
##
## F M
## 2 11
EthnicityCount
##
## HL NHL
## 1 12
RaceCount
##
## A AI M W
## 1 1 3 8
totalData = totalData %>%filter(subID %in%remainSub)
temp = totalData %>% group_by(subID) %>% summarize(num_noresponses= sum(keys==-1), trialNum = length(subID))
sprintf("total trial number: %i; Number of subjects %i",temp$trialNum[1],dim(temp)[1])
## [1] "total trial number: 84; Number of subjects 13"
temp
## # A tibble: 13 x 3
## subID num_noresponses trialNum
## <int> <int> <int>
## 1 2 0 84
## 2 4 0 84
## 3 5 0 84
## 4 12 3 62
## 5 17 0 84
## 6 18 0 84
## 7 22 0 84
## 8 23 0 84
## 9 25 0 84
## 10 26 15 84
## 11 27 6 84
## 12 29 17 84
## 13 33 0 84
ggplot(temp, aes( y= num_noresponses, x= subID))+
geom_point()+
geom_hline(yintercept=42, linetype="dashed", color = "red", size=0.5)+
labs(title="No responses", x ="subjuect ID", y = "number of no responses")+
plotformat
#check feature number
tempFeature = totalData %>% group_by(subID) %>%summarize(feature = feature_index[1])
sprintf("Feature 1: %i; Feature 2: %i; Feature 3: %i",sum(tempFeature$feature==1),sum(tempFeature$feature==2),sum(tempFeature$feature==3))
## [1] "Feature 1: 3; Feature 2: 5; Feature 3: 5"
summarize = dplyr::summarize
completeFnames = unlist(completeFnames)
#trial conditions: different:0; same:1 (same as keys)
totalData$cond = NA;
totalData$cond[totalData$Fimg==totalData$Simg]=1;
totalData$cond[totalData$Fimg!=totalData$Simg]=0;
totalData$level_diff = abs(totalData$Simg-totalData$Fimg);
#Assign pair identity (ignore order)
totalData$pairIdentity = NA;
totalData$pairIdentity[totalData$cond==1&totalData$Fimg==1]=1
totalData$pairIdentity[totalData$cond==1&totalData$Fimg==2]=2
totalData$pairIdentity[totalData$cond==1&totalData$Fimg==3]=3
totalData$pairIdentity[totalData$cond==1&totalData$Fimg==4]=4
totalData$pairIdentity[totalData$cond==1&totalData$Fimg==5]=5
totalData$pairIdentity[totalData$cond==1&totalData$Fimg==6]=6
totalData$pairIdentity[totalData$cond==1&totalData$Fimg==7]=7
totalData$pairIdentity[totalData$Fimg==1&totalData$Simg==2]=12
totalData$pairIdentity[totalData$Fimg==2&totalData$Simg==1]=12
totalData$pairIdentity[totalData$Fimg==1&totalData$Simg==3]=13
totalData$pairIdentity[totalData$Fimg==3&totalData$Simg==1]=13
totalData$pairIdentity[totalData$Fimg==1&totalData$Simg==4]=14
totalData$pairIdentity[totalData$Fimg==4&totalData$Simg==1]=14
totalData$pairIdentity[totalData$Fimg==1&totalData$Simg==5]=15
totalData$pairIdentity[totalData$Fimg==5&totalData$Simg==1]=15
totalData$pairIdentity[totalData$Fimg==1&totalData$Simg==6]=16
totalData$pairIdentity[totalData$Fimg==6&totalData$Simg==1]=16
totalData$pairIdentity[totalData$Fimg==1&totalData$Simg==7]=17
totalData$pairIdentity[totalData$Fimg==7&totalData$Simg==1]=17
totalData$pairIdentity[totalData$Fimg==2&totalData$Simg==3]=23
totalData$pairIdentity[totalData$Fimg==3&totalData$Simg==2]=23
totalData$pairIdentity[totalData$Fimg==2&totalData$Simg==4]=24
totalData$pairIdentity[totalData$Fimg==4&totalData$Simg==2]=24
totalData$pairIdentity[totalData$Fimg==2&totalData$Simg==5]=25
totalData$pairIdentity[totalData$Fimg==5&totalData$Simg==2]=25
totalData$pairIdentity[totalData$Fimg==2&totalData$Simg==6]=26
totalData$pairIdentity[totalData$Fimg==6&totalData$Simg==2]=26
totalData$pairIdentity[totalData$Fimg==2&totalData$Simg==7]=27
totalData$pairIdentity[totalData$Fimg==7&totalData$Simg==2]=27
totalData$pairIdentity[totalData$Fimg==3&totalData$Simg==4]=34
totalData$pairIdentity[totalData$Fimg==4&totalData$Simg==3]=34
totalData$pairIdentity[totalData$Fimg==3&totalData$Simg==5]=35
totalData$pairIdentity[totalData$Fimg==5&totalData$Simg==3]=35
totalData$pairIdentity[totalData$Fimg==3&totalData$Simg==6]=36
totalData$pairIdentity[totalData$Fimg==6&totalData$Simg==3]=36
totalData$pairIdentity[totalData$Fimg==3&totalData$Simg==7]=37
totalData$pairIdentity[totalData$Fimg==7&totalData$Simg==3]=37
totalData$pairIdentity[totalData$Fimg==4&totalData$Simg==5]=45
totalData$pairIdentity[totalData$Fimg==5&totalData$Simg==4]=45
totalData$pairIdentity[totalData$Fimg==4&totalData$Simg==6]=46
totalData$pairIdentity[totalData$Fimg==6&totalData$Simg==4]=46
totalData$pairIdentity[totalData$Fimg==4&totalData$Simg==7]=47
totalData$pairIdentity[totalData$Fimg==7&totalData$Simg==4]=47
totalData$pairIdentity[totalData$Fimg==5&totalData$Simg==6]=56
totalData$pairIdentity[totalData$Fimg==6&totalData$Simg==5]=56
totalData$pairIdentity[totalData$Fimg==5&totalData$Simg==7]=57
totalData$pairIdentity[totalData$Fimg==7&totalData$Simg==5]=57
totalData$pairIdentity[totalData$Fimg==6&totalData$Simg==7]=67
totalData$pairIdentity[totalData$Fimg==7&totalData$Simg==6]=67
totalData$pairIdentity = as.factor(totalData$pairIdentity)
summarize = dplyr::summarize
#Times
TimesRT = totalData %>% group_by(subID,pairIdentity,feature_index,cond)%>%summarize(Frt = rt[1],Srt = rt[2], Trt = rt[3], Ftrial = trialNum[1],Strial = trialNum[2],Ttrial = trialNum[3])
TimesRT_long = gather(TimesRT, response_type, number_resp,Frt,Srt,Trt)
ggplot(subset(TimesRT_long, cond==1), aes(x = pairIdentity, y = number_resp, group = pairIdentity, color = as.factor(pairIdentity)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_jitter(width=0.2,alpha = 0.5)+
ylim(0,2500)+
facet_wrap(response_type~feature_index)+
labs(title="Same", x = "level", y = "RT")+
plotformat
## Warning: Removed 5 rows containing non-finite values (stat_boxplot).
## Warning: Removed 7 rows containing missing values (geom_point).
ggplot(subset(TimesRT_long, cond==0), aes(x = pairIdentity, y = number_resp, group = pairIdentity, color = as.factor(pairIdentity)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(response_type~feature_index)+
labs(title="Different", x = "Same level", y = "RT")+
plotformat
## Warning: Removed 18 rows containing non-finite values (stat_boxplot).
## Warning: Removed 18 rows containing missing values (geom_point).
TimesRTcorrect = totalData %>% group_by(subID,pairIdentity,feature_index,cond)%>%filter(accuracy==1) %>%summarize(Frt = rt[1],Srt = rt[2], Trt = rt[3], Ftrial = trialNum[1],Strial = trialNum[2],Ttrial = trialNum[3])
TimesRTcorrect_long = gather(TimesRTcorrect, response_type, number_resp,Frt,Srt,Trt)
ggplot(subset(TimesRTcorrect_long, cond==1), aes(x = pairIdentity, y = number_resp, group = pairIdentity, color = as.factor(pairIdentity)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(response_type~feature_index)+
labs(title="Correct same", x = "Same level", y = "RT")+
plotformat
## Warning: Removed 99 rows containing non-finite values (stat_boxplot).
## Warning: Removed 99 rows containing missing values (geom_point).
ggplot(subset(TimesRTcorrect_long, cond==0), aes(x = pairIdentity, y = number_resp, group = pairIdentity, color = as.factor(pairIdentity)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(response_type~feature_index,strip.position = 'bottom')+
labs(title="Correct different", x = "Same level", y = "RT")+
theme_facet()
## Warning: Removed 240 rows containing non-finite values (stat_boxplot).
## Warning: Removed 240 rows containing missing values (geom_point).
summarize = dplyr::summarize
basic = totalData %>% filter(keys>=0)%>% group_by(subID)%>% summarize(num_noresposnes = sum(keys==-1), num_same_resp = sum(keys==1), num_diff_resp = sum(keys==0), num_same_trials =sum(cond==1), num_diff_trials = sum(cond==0),
hit = sum(keys==1&cond==1),
fa= sum(keys==1&cond==0),
cr = sum(keys==0&cond==0),
miss = sum(keys==0&cond==1),
HitRate =sum(keys==1&cond==1)/sum(cond==1),
FARate = sum(keys==1&cond==0)/sum(cond==0),
CRRate = sum(keys==0&cond==0)/sum(cond==0),
MissRate = sum(keys==0&cond==1)/sum(cond==1),
d_p = qnorm(HitRate)-qnorm(FARate))
basic
## # A tibble: 13 x 15
## subID num_noresposnes num_same_resp num_diff_resp num_same_trials
## <int> <int> <int> <int> <int>
## 1 2 0 33 51 21
## 2 4 0 41 43 21
## 3 5 0 41 43 21
## 4 12 0 35 24 15
## 5 17 0 28 56 21
## 6 18 0 29 55 21
## 7 22 0 40 44 21
## 8 23 0 33 51 21
## 9 25 0 17 67 21
## 10 26 0 35 34 18
## 11 27 0 18 60 20
## 12 29 0 34 33 15
## 13 33 0 34 50 21
## # ... with 10 more variables: num_diff_trials <int>, hit <int>, fa <int>,
## # cr <int>, miss <int>, HitRate <dbl>, FARate <dbl>, CRRate <dbl>,
## # MissRate <dbl>, d_p <dbl>
#plotting
basic_longform = gather(basic, response_type, number_resp, HitRate,FARate,CRRate,MissRate)
head(basic_longform)
## # A tibble: 6 x 13
## subID num_noresposnes num_same_resp num_diff_resp num_same_trials
## <int> <int> <int> <int> <int>
## 1 2 0 33 51 21
## 2 4 0 41 43 21
## 3 5 0 41 43 21
## 4 12 0 35 24 15
## 5 17 0 28 56 21
## 6 18 0 29 55 21
## # ... with 8 more variables: num_diff_trials <int>, hit <int>, fa <int>,
## # cr <int>, miss <int>, d_p <dbl>, response_type <chr>,
## # number_resp <dbl>
ggplot(basic_longform, aes(x = response_type, y = number_resp, color = response_type))+
geom_boxplot(fill = "white",lwd = 1)+
geom_jitter(width=0.2,alpha = 0.5)+
labs(title="Proportaion response type", x = "response type", y = "proportion")+
plotformat
#d-p
ggplot(basic, aes(x = subID, y = d_p, color = as.factor(subID)))+
geom_point(size=3)+
labs(title="d prime", x = "subject", y = "d prime")+
plotformat
remain_dp = basic$subID[basic$d_p>0.5]
sprintf("remove d prime lower than 0.5 %i",length(remain_dp))
## [1] "remove d prime lower than 0.5 4"
totalData = totalData %>%filter(subID%in%remain_dp)
#check feature number
tempFeature = totalData %>% group_by(subID) %>%summarize(feature = feature_index[1])
sprintf("Feature 1: %i; Feature 2: %i; Feature 3: %i",sum(tempFeature$feature==1),sum(tempFeature$feature==2),sum(tempFeature$feature==3))
## [1] "Feature 1: 1; Feature 2: 2; Feature 3: 1"
##########
basicFeature = totalData %>% filter(keys>=0)%>% group_by(subID,feature_index)%>% summarize(num_noresposnes = sum(keys==-1), num_same_resp = sum(keys==1), num_diff_resp = sum(keys==0), num_same_trials =sum(cond==1), num_diff_trials = sum(cond==0),
hit = sum(keys==1&cond==1),
fa= sum(keys==1&cond==0),
cr = sum(keys==0&cond==0),
miss = sum(keys==0&cond==1),
HitRate =sum(keys==1&cond==1)/sum(cond==1),
FARate = sum(keys==1&cond==0)/sum(cond==0),
CRRate = sum(keys==0&cond==0)/sum(cond==0),
MissRate = sum(keys==0&cond==1)/sum(cond==1),
d_p = qnorm(HitRate)-qnorm(FARate))
basicFeature_longform = gather(basicFeature, response_type, number_resp, HitRate,FARate,CRRate,MissRate)
head(basicFeature_longform)
## # A tibble: 6 x 14
## # Groups: subID [4]
## subID feature_index num_noresposnes num_same_resp num_diff_resp
## <int> <dbl> <int> <int> <int>
## 1 2 2 0 33 51
## 2 17 3 0 28 56
## 3 18 1 0 29 55
## 4 22 2 0 40 44
## 5 2 2 0 33 51
## 6 17 3 0 28 56
## # ... with 9 more variables: num_same_trials <int>, num_diff_trials <int>,
## # hit <int>, fa <int>, cr <int>, miss <int>, d_p <dbl>,
## # response_type <chr>, number_resp <dbl>
ggplot(basicFeature_longform, aes(x = response_type, y = number_resp, color = response_type))+
geom_boxplot(fill = "white",lwd = 1)+
geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(~feature_index)+
labs(title="Proportaion response type by feature", x = "response type", y = "proportion")+
plotformat
###########
basicLevel = totalData %>% filter(keys>=0)%>% group_by(subID,level_diff)%>% summarize(num_noresposnes = sum(keys==-1), num_same_resp = sum(keys==1), num_diff_resp = sum(keys==0), num_same_trials =sum(cond==1), num_diff_trials = sum(cond==0),
hit = sum(keys==1&cond==1),
fa= sum(keys==1&cond==0),
cr = sum(keys==0&cond==0),
miss = sum(keys==0&cond==1),
HitRate =sum(keys==1&cond==1)/sum(cond==1),
FARate = sum(keys==1&cond==0)/sum(cond==0),
CRRate = sum(keys==0&cond==0)/sum(cond==0),
MissRate = sum(keys==0&cond==1)/sum(cond==1),
d_p = qnorm(HitRate)-qnorm(FARate))
basicLevel_longform = gather(basicLevel, response_type, number_resp, HitRate,FARate,CRRate,MissRate)
head(basicLevel_longform)
## # A tibble: 6 x 14
## # Groups: subID [1]
## subID level_diff num_noresposnes num_same_resp num_diff_resp
## <int> <dbl> <int> <int> <int>
## 1 2 0 0 19 2
## 2 2 1 0 9 9
## 3 2 2 0 3 12
## 4 2 3 0 1 11
## 5 2 4 0 1 8
## 6 2 5 0 0 6
## # ... with 9 more variables: num_same_trials <int>, num_diff_trials <int>,
## # hit <int>, fa <int>, cr <int>, miss <int>, d_p <dbl>,
## # response_type <chr>, number_resp <dbl>
ggplot(basicLevel_longform, aes(x = response_type, y = number_resp, color = response_type))+
geom_boxplot(fill = "white",lwd = 1)+
geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(~level_diff,nrow = 1)+
labs(title="Proportaion response type by difficulty level", x = "response type", y = "proportion")+
theme_facet()
## Warning: Removed 56 rows containing non-finite values (stat_boxplot).
## Warning: Removed 56 rows containing missing values (geom_point).
###########
basicLevelFeature = totalData %>% filter(keys>=0)%>% group_by(subID,level_diff,feature_index)%>% summarize(num_noresposnes = sum(keys==-1), num_same_resp = sum(keys==1), num_diff_resp = sum(keys==0), num_same_trials =sum(cond==1), num_diff_trials = sum(cond==0),
hit = sum(keys==1&cond==1),
fa= sum(keys==1&cond==0),
cr = sum(keys==0&cond==0),
miss = sum(keys==0&cond==1),
HitRate =sum(keys==1&cond==1)/sum(cond==1),
FARate = sum(keys==1&cond==0)/sum(cond==0),
CRRate = sum(keys==0&cond==0)/sum(cond==0),
MissRate = sum(keys==0&cond==1)/sum(cond==1),
d_p = qnorm(HitRate)-qnorm(FARate))
basicLevelFeature_longform = gather(basicLevelFeature, response_type, number_resp, HitRate,FARate,CRRate,MissRate)
head(basicLevelFeature_longform)
## # A tibble: 6 x 15
## # Groups: subID, level_diff [6]
## subID level_diff feature_index num_noresposnes num_same_resp
## <int> <dbl> <dbl> <int> <int>
## 1 2 0 2 0 19
## 2 2 1 2 0 9
## 3 2 2 2 0 3
## 4 2 3 2 0 1
## 5 2 4 2 0 1
## 6 2 5 2 0 0
## # ... with 10 more variables: num_diff_resp <int>, num_same_trials <int>,
## # num_diff_trials <int>, hit <int>, fa <int>, cr <int>, miss <int>,
## # d_p <dbl>, response_type <chr>, number_resp <dbl>
ggplot(basicLevelFeature_longform, aes(x = response_type, y = number_resp, color = response_type))+
geom_boxplot(fill = "white",lwd = 1)+
geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(feature_index~level_diff,nrow = 3,strip.position = "bottom")+
labs(title="Proportaion response type by difficulty level", x = "level diff", y = "proportion")+
theme_facet()
## Warning: Removed 56 rows containing non-finite values (stat_boxplot).
## Warning: Removed 56 rows containing missing values (geom_point).
summarize = dplyr::summarize
responseData = totalData %>%filter(keys>=0,accuracy==1)
ggplot(responseData, aes(x = level_diff, y = rt, group = as.factor(level_diff), color = as.factor(level_diff)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(~feature_index)+
ylim(0,2500)+
labs(title="Reaction type by difficulty levels", x = "response type", y = "RT (ms)")+
plotformat
responseData_firstHalf = totalData %>%filter(keys>=0,accuracy==1,trialNum<42)
ggplot(responseData_firstHalf, aes(x = level_diff, y = rt, group = as.factor(level_diff), color = as.factor(level_diff)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(~feature_index)+
ylim(0,2500)+
labs(title="Reaction type by difficulty levels -first", x = "response type", y = "RT (ms)")+
plotformat
responseData_lastHalf = totalData %>%filter(keys>=0,accuracy==1,trialNum>42)
ggplot(responseData_lastHalf, aes(x = level_diff, y = rt, group = as.factor(level_diff), color = as.factor(level_diff)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(~feature_index)+
ylim(0,2500)+
labs(title="Reaction type by difficulty levels -last", x = "response type", y = "RT (ms)")+
plotformat
#temp = responseData %>% group_by(subID, level_diff, feature_index) %>%summarise(mean_RT = mean(rt))
#ggplot(temp,aes(x = level_diff, y = mean_RT, group = level_diff))+
# geom_boxplot(fill = "white",lwd = 1)+
# geom_jitter(width=0.2,alpha = 0.5)+
# facet_wrap(~feature_index)+
# labs(title="Proportaion response type", x = "response type", y = "RT (ms)")+
# plotformat
######
responseData = totalData %>%filter(keys>=0,accuracy==1,level_diff==0)
ggplot(responseData, aes(x = pairIdentity, y = rt, group = as.factor(pairIdentity), color = as.factor(pairIdentity)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(~feature_index)+
ylim(0,2500)+
labs(title="Reaction type for same pairs by levels", x = "levels", y = "RT (ms)")+
plotformat
responseData = totalData %>%filter(keys>=0,accuracy==1,level_diff==1)
ggplot(responseData, aes(x = pairIdentity, y = rt, group = as.factor(pairIdentity), color = as.factor(pairIdentity)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(~feature_index)+
ylim(0,2500)+
labs(title="Reaction type for difference -- level 1", x = "levels", y = "RT (ms)")+
plotformat
responseData = totalData %>%filter(keys>=0,accuracy==1,level_diff==2)
ggplot(responseData, aes(x = pairIdentity, y = rt, group = as.factor(pairIdentity), color = as.factor(pairIdentity)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(~feature_index)+
ylim(0,2500)+
labs(title="Reaction type for difference -- level 2", x = "levels", y = "RT (ms)")+
plotformat
responseData = totalData %>%filter(keys>=0,accuracy==1,level_diff==3)
ggplot(responseData, aes(x = pairIdentity, y = rt, group = as.factor(pairIdentity), color = as.factor(pairIdentity)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(~feature_index)+
ylim(0,2500)+
labs(title="Reaction type for difference -- level 3", x = "levels", y = "RT (ms)")+
plotformat
responseData = totalData %>%filter(keys>=0,accuracy==1,level_diff==4)
ggplot(responseData, aes(x = pairIdentity, y = rt, group = as.factor(pairIdentity), color = as.factor(pairIdentity)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(~feature_index)+
ylim(0,2500)+
labs(title="Reaction type for difference -- level 4", x = "levels", y = "RT (ms)")+
plotformat
responseData = totalData %>%filter(keys>=0,accuracy==1,level_diff==5)
ggplot(responseData, aes(x = pairIdentity, y = rt, group = as.factor(pairIdentity), color = as.factor(pairIdentity)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(~feature_index)+
ylim(0,2500)+
labs(title="Reaction type for difference -- level 5", x = "levels", y = "RT (ms)")+
plotformat
responseData = totalData %>%filter(keys>=0,accuracy==1,level_diff==6)
ggplot(responseData, aes(x = pairIdentity, y = rt, group = as.factor(pairIdentity), color = as.factor(pairIdentity)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(~feature_index)+
ylim(0,2500)+
labs(title="Reaction type for difference -- level 6", x = "levels", y = "RT (ms)")+
plotformat
##accuracy and difficulty levels
accuracyData = totalData %>%filter(keys>=0)%>%group_by(subID,feature_index,level_diff)%>%summarize(meanAccuracy = sum(accuracy==1)/length(subID))
ggplot(accuracyData, aes(x = level_diff, y = meanAccuracy, group = as.factor(level_diff), color = as.factor(level_diff)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(~feature_index)+
labs(title="Accuracy by difficulty levels", x = "difficulty level", y = "proportion correct")+
plotformat
accuracyDataPairSame = totalData %>%filter(keys>=0,cond==1)%>%group_by(subID,feature_index,pairIdentity)%>%summarize(propAccuracy = sum(accuracy==1)/length(subID))
ggplot(accuracyDataPairSame, aes(x = pairIdentity, y = propAccuracy, group = as.factor(pairIdentity), color = as.factor(pairIdentity)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_point(alpha = 0.5)+
#geom_jitter(width=0.05,alpha = 0.5)+
facet_wrap(~feature_index)+
labs(title="Accuracy by same pairs", x = "difficulty level", y = "proportion correct")+
plotformat
accuracyDataPairDiff = totalData %>%filter(keys>=0,cond==0)%>%group_by(subID,feature_index,pairIdentity)%>%summarize(propAccuracy = sum(accuracy==1)/length(subID))
ggplot(accuracyDataPairDiff, aes(x = as.factor(pairIdentity), y = propAccuracy, group = as.factor(pairIdentity), color = as.factor(pairIdentity)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_point(alpha = 0.5)+
#geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(~feature_index)+
labs(title="Accuracy by different pairs", x = "difficulty level", y = "proportion correct")+
plotformat
accuracyDataPairDiff_level = totalData %>%filter(keys>=0,cond==0)%>%group_by(subID,feature_index,pairIdentity)%>%summarize(propAccuracy = sum(accuracy==1)/length(subID), level_diff = level_diff[1])
ggplot(filter(accuracyDataPairDiff_level,level_diff==1), aes(x = as.factor(pairIdentity), y = propAccuracy, group = as.factor(pairIdentity), color = as.factor(pairIdentity)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_point(alpha = 0.5)+
#geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(~feature_index)+
labs(title="Accuracy by different pairs --level 01", x = "difficulty level", y = "proportion correct")+
plotformat
ggplot(filter(accuracyDataPairDiff_level,level_diff==2), aes(x = as.factor(pairIdentity), y = propAccuracy, group = as.factor(pairIdentity), color = as.factor(pairIdentity)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_point(alpha = 0.5)+
#geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(~feature_index)+
labs(title="Accuracy by different pairs --level 02", x = "difficulty level", y = "proportion correct")+
plotformat
ggplot(filter(accuracyDataPairDiff_level,level_diff==3), aes(x = as.factor(pairIdentity), y = propAccuracy, group = as.factor(pairIdentity), color = as.factor(pairIdentity)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_point(alpha = 0.5)+
#geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(~feature_index)+
labs(title="Accuracy by different pairs --level 03", x = "difficulty level", y = "proportion correct")+
plotformat
ggplot(filter(accuracyDataPairDiff_level,level_diff==4), aes(x = as.factor(pairIdentity), y = propAccuracy, group = as.factor(pairIdentity), color = as.factor(pairIdentity)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_point(alpha = 0.5)+
#geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(~feature_index)+
labs(title="Accuracy by different pairs --level 04", x = "difficulty level", y = "proportion correct")+
plotformat
ggplot(filter(accuracyDataPairDiff_level,level_diff==5), aes(x = as.factor(pairIdentity), y = propAccuracy, group = as.factor(pairIdentity), color = as.factor(pairIdentity)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_point(alpha = 0.5)+
#geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(~feature_index)+
labs(title="Accuracy by different pairs --level 05", x = "difficulty level", y = "proportion correct")+
plotformat
ggplot(filter(accuracyDataPairDiff_level,level_diff==6), aes(x = as.factor(pairIdentity), y = propAccuracy, group = as.factor(pairIdentity), color = as.factor(pairIdentity)))+
geom_boxplot(fill = "white",lwd = 1)+
geom_point(alpha = 0.5)+
#geom_jitter(width=0.2,alpha = 0.5)+
facet_wrap(~feature_index)+
labs(title="Accuracy by different pairs --level 06", x = "difficulty level", y = "proportion correct")+
plotformat